I find myself doing this repeatedly out of habit and wonder if I'm not the only one.
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While ⌘S isn't a key combo that I hit very often when using my browser, I am strongly opposed to a web site taking over standard keyboard commands. ⌘L, ⌘Q, ⌘O, ⌘H, ⌘R, ⌘S -- these (and really anything (on the Mac) using the command key) should be used to control the browser, not the site.