I've got three accounts: Stack Overflow, Meta and Stack Apps. Once I received the 100 association bonus, all three accounts got it. But when I view my Stack Overflow and Meta profiles, they don't show those 100 points for the Stack Apps profile. Meanwhile if I go directly to the Stack Apps profile, the reputation is correct there.
The association bonus for Stack Overflow and Meta is visible in all three profiles.
So, what is the reason that it is not showing bonus reputation of the Stack Apps profile?