I've had reputation above 200 here for quite some while now, but just now I noticed that my combined profile flair now does include this site. I'm pretty sure this wasn't so yesterday (or perhaps the day before). Any changes in policy there?
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Your flair only includes up to seven sites where you have more than 200 reputation. Previously, Server Fault was your seventh top site as far as reputation (see your accounts), and you just passed that amount here on Meta which makes Meta.SO your seventh top site now:
There have been no changes in policy, only changes in your reputation. Flair images are heavily cached and do take a while to update.