I have read through some of the previous questions about linking SO to Meta and can't find a definitive answer or it's been months since it was last brought up (so I apologize in advance for asking a repetitive question). Is there any way I can link these two accounts and have reputation points carry over? Thanks in advance for your help!
This meta is special.
//Here I have assumed that you are asking about the situation where meta.foo.stackexchange.com reputation is inherited from foo.stackexchange.com.
If, instead you are asking about the 100 rep bonus for associating accounts, then you can get that. There is an "accounts" tab in you profile on every site, and you control associations from there.