Well, which is it? One flag or no flags? I do have the all
tab selected, so that's not the problem. The flag circle in chat itself is unaffected, only the flags tab and the top bar of chat.SE/MSO/SO appear to show this issue. It also doesn't go away on-click.
1
up there half the time, when there really aren't any flags. – Manishearth Jun 6 '12 at 4:02